The answer is basically yes, it will get updated still. However, if you do what I said in the instructions, it will never be an issue. The easiest way is to never edit the files in the location to which you've downloaded them. You download them to an "SVN" directory that you create, then copy the files to your 'script' directory.
What's happened is that you've copied the /.svn directory along with the other files. You need not copy that directory.
So, if you go to your InnerSpace directory and then the /Scripts subfolder ..just delete the .svn directory ....and the same for all of the directories there in the InnerSpace tree.